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Software and web-based applications
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  • Program for Estimation of Effective Number of Tests by V. Moskvina and K.M. Schmidt.
    Please note that the file archive was replaced on 28 Sept 2007 with an updated version
  • GIT Gene Interaction Tool
    Authors: Daniel Chubb, Ivan Nikolov, Valentina Moskvina.
  • HADES
    Authors: Daniel Chubb, Ivan Nikolov, Valentina Moskvina. This is the program which was used for posterior halplotype and diplotype probabilities estimation based on Maximum Likelihood haplotype frequencies estimations from cocaphase in case of unrelated individuals and tdtphase for children from trios. The data could be submitted in standard pedigree format (compatible with Dept. database) or in HapMap format.
  • File Conversion Utility
    Converts text files to different formats. Alpha version
  • Design of Case-Controls Studies with Unscreened Controls. by Valentina Moskvina
  • Calculation of Hardy-Weinberg Equilibrium test for case/control studies. by Ivan Nikolov
  • CASTANET data entry
  • Psychmed Departmental Genetic Database
  • WTCCC mirror database
  • Alzheimer's Disease Main Database
  • NEURODYS WGA database
  • Bulgarian Case Controls Collection Database
  • The OLDER Dept. Database (first version) Limited functionality.
  • Tag Marker Automation Software
  • Combine CNVs from Affymetryx NSP and STY chips Standalone windows-based program by Dobril Ivanov
  • check CEPH from Sequenom file Standalone windows-based program by Dobril Ivanov
  • Combine CNVs from PennCNV Standalone windows-based program by Dobril Ivanov
  • win_2_unix Convert Windows files to Unix- unix-based program by Dobril Ivanov

  • Other resources

  • Short Course in Genetic Epidemiology, September 2005 course materials
  • Short UNIX manual